BLKPROB Version 4/11/99.1 Database=../data-blplus/blocks.dat ___________ ___________ ___________ |\ __________\ |___________| /__________ /| | | | | | | | | | | **********| |***********| |********** | | | | * BLOCKS | |EMAIL & WWW| |SEARCHER * | | | | **********| |***********| |********** | | \|___________|___________|___________|___________|___________|/ |\ __________\ /__________ /| | | blocks@ | | http:// | | | | blocks. | | blocks. | | | | fhcrc. | | fhcrc. | | | | org | | org | | \|___________| |___________|/ Here are your search results. The database searched was Blocks+ (19 Mar 99) which includes: BLOCKS 11.0 consisting of 4034 blocks representing 994 groups documented in PROSITE 15, plus 2277 blocks from 352 groups documented in PRINTS 22.0 but not represented in BLOCKS, plus 1083 blocks from 254 groups documented in PFAM 3.4 but not represented in BLOCKS or PRINTS, plus 1035 blocks from 268 groups documented in PRODOM 36 but not represented in BLOCKS, PRINTS or PFAM, plus 480 blocks from 127 groups documented in DOMO 2.0 but not represented in BLOCKS, PRINTS, PFAM or PRODOM for a total of 8909 blocks from 1995 groups. Get more information at http://blocks.fhcrc.org. If you found the Blocks Searcher useful, please cite: S Henikoff & JG Henikoff, "Protein family classification based on searching a database of blocks", Genomics 19:97-107 (1994). ============================================================================== Each hit consists of one or more blocks from a protein group found in the query sequence. One set of the highest-scoring blocks that are in the correct order and separated by distances comparable to the Blocks database is selected for analysis. If this set includes multiple blocks the probability that the lower scoring blocks support the highest scoring block is reported. Maps of the database blocks and query sequence are shown: AAA represents a block roughly in proportion to its width. : represents the minimum distance between blocks in the database. . represents the maximum distance between blocks in the database. < > indicate the sequence has been truncated to fit the page. The query map is aligned on the highest scoring block. Multiple block hits that are consistent with the highest scoring block are separated by colons. Block hits that are not consistent are mapped below. The alignment of the query sequence with the sequence closest to it in the BLOCKS database is shown. The distance between detected blocks is listed as (min, max): for the database entry followed by the distance in the query. Upper case in the query indicates at least one occurrence of the residue in that column of the block. ============================================================================= Note: For searches using DNA queries, "Location" refers to the position in the query in base pairs from 5' to 3' on the + strand, whereas the map and alignment show the translated position in amino acid residues. =============================================================================[Return to top]
[Return to top] [Blocks Home]Hits
Query=7UP1_DROME|P16375 STEROID RECEPTOR SEVEN-UP TYPE 1 | PS00031 Size=543 Amino Acids Blocks Searched=8909 Alignments Done=5067002 Cutoff Expected Value= 2 ============================================================================== Anchor Combined Family Strand Blocks E-value E-value BL00031 Nuclear hormones receptors DNA-bind 1 2 of 2 9.1e-27 4.9e-52 PR00545 RETINOIC ACID RECEPTOR SIGNATURE 1 6 of 8 1.1e-09 4.3e-22 PR00546 THYROID HORMONE RECEPTOR SIGNATURE 1 2 of 9 11 0.56 PR00307 ADENOVIRUS FIBRE PROTEIN SIGNATURE 1 1 of 7 1.2 1.1 PR00678 PI3 KINASE P85 REGULATORY SUBUNIT S 1 1 of 10 1.6 1.6 BL01114 GPR1/FUN34/yaaH family proteins. 1 1 of 4 1.7 1.6 ============================================================================== >BL00031 2/2 blocks: Nuclear hormones receptors DNA-binding region proteins. Block Frame Location (aa) Block E-value BL00031A 0 200-232 9.1e-27 BL00031B 0 234-265 3.6e-24 Other reported alignments: |--- 31 amino acids---| BL00031 AAAAAAAAAAAAAAAAAAAAAAAAAA........BBBBBBBBBBBBBBBBBBBBBBBBBB 7UP1_DROME AAAAAAAAAAAAAAAAAAAAAAAAAA:BBBBBBBBBBBBBBBBBBBBBBBBBB BL00031A <->A (4,603):199 7UP1_DROME 200 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNL ||||||||||||||||||||||||||||||||| 7UP1_DROME 200 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNL BL00031B A<->B (0,10):1 7UP1_DROME 234 YSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGM |||||||||||||||||||||||||||||||| 7UP1_DROME 234 YSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGM ------------------------------------------------------------------------------ >PR00545 6/8 blocks: RETINOIC ACID RECEPTOR SIGNATURE Block Frame Location (aa) Block E-value PR00545A 0 266-280 51 **biased** PR00545C 0 335-355 0.066 PR00545E 0 420-440 36 PR00545F 0 460-477 9.2 PR00545G 0 481-500 1.1e-09 PR00545H 0 508-527 0.00098 Other reported alignments: |--- 116 amino acids---| PR00545 AAA::..BBBB::..CCCCC:::::.DDDD:::::...EEEEE::::FFFF:GGGG::HHHH 7UP1_DROME <:::AAA::::::::::::CCCCC::::::::::::::EEEEE::::FFFF:GGGG::HHHH PR00545A <->A (120,271):265 PR00545C A<->C (39,55):54 C41977 227 KREAVQEERQRGKER C41977 288 SDPVTNICQAADKQLFTLVEW ||||| | ||| | || ||| 7UP1_DROME 266 rREAVQrgRvpptQp 7UP1_DROME 335 imgidNICelAarlLFsaVEW PR00545E C<->E (63,80):64 RRXG_HUMAN 347 FDRVLTELVSKMKDMQMDKSE | | | | | | | 7UP1_DROME 420 hiRifqEqVeKlKalhvDsaE PR00545F E<->F (19,19):19 PR00545G F<->G (3,3):3 RRXA_CHICK 391 PSEVESLREKVYATLEAY C41977 433 KYPEQPGRFAKLLLRLPALR ||| || || | || || || ||||||| || 7UP1_DROME 460 vthiESLqEKsqcaLEeY 7UP1_DROME 481 qYPnQPtRFgKLLLRLPsLR PR00545H G<->H (7,7):7 C41977 460 EHLFFFKLIGDTPIDTFLME | ||| | | ||| | 7UP1_DROME 508 EqLFFvrLvGkTPIeTlird ------------------------------------------------------------------------------ >PR00546 2/9 blocks: THYROID HORMONE RECEPTOR SIGNATURE Block Frame Location (aa) Block E-value PR00546H 0 367-386 34 PR00546I 0 434-456 11 Other reported alignments: |--- 125 amino acids---| PR00546 AAA:::::BB:::::CCCDDDD:EEEE:FFFF:::..GGGG:HHHH:::::::::IIIII 7UP1_DROME <:::::::::::::::::::::::::::::::::::::::::HHHH:::::::::IIIII PR00546H <->H (206,435):366 THA1_HUMAN 244 CEDQIILLKGCCMEIMSLRA || || | | | 7UP1_DROME 367 vtDQvaLLrlvwsElfvLnA PR00546I H<->I (45,45):47 THA1_HUMAN 309 FNLDDTEVALLQAVLLMSTDRSG | | | | | || | 7UP1_DROME 434 lhvDsaEyscLkAivLftTDacG ------------------------------------------------------------------------------ >PR00307 1/7 blocks: ADENOVIRUS FIBRE PROTEIN SIGNATURE Block Frame Location (aa) Block E-value PR00307B 0 3-15 1.2 Other reported alignments: |--- 460 amino acids---| PR00307 AB:.........C................D:........................EF:::.G 7UP1_DROME B PR00307B <->B (18,43):2 FIBP_ADECG 21 PKPSTQPPFFNDR ||| | ||| | 7UP1_DROME 3 asPSTaPGFFNPR ------------------------------------------------------------------------------ >PR00678 1/10 blocks: PI3 KINASE P85 REGULATORY SUBUNIT SIGNATURE Block Frame Location (aa) Block E-value PR00678D 0 416-434 1.6 Other reported alignments: |--- 157 amino acids---| PR00678 AAA::::::BB::::CCCC::::::DDDEEEE:::::FFFGGGG::::HHHHIIIJJJJ 7UP1_DROME <::::::::::::::::::::::::DDD PR00678D <->D (186,486):415 RATP3KA 486 AFNDTIKIFEEQCHPQERY || | | || || 7UP1_DROME 416 AFmDhIrIFqEQveklkal ------------------------------------------------------------------------------ >BL01114 1/4 blocks: GPR1/FUN34/yaaH family proteins. Block Frame Location (aa) Block E-value BL01114A 0 290-312 1.7 **biased** Other reported alignments: |--- 77 amino acids---| BL01114 AAAAAAA:::::.BBBBBBBBBBB:::::::..CCCCCCCCCCCCCDDDDDDDDDDDDDD 7UP1_DROME AAAAAAA BL01114A <->A (4,85):289 YD84_YEAST 83 QFANPVPLGLASFSLSCLVLSLI | || | | | | | | 7UP1_DROME 290 QiANgdPmGiAGFnghsyLsSyI ------------------------------------------------------------------------------ 6 possible hits reported