COBBLER aligns a set of Blocks with a protein sequence and embeds a consensus representation of the Blocks in the sequence, which can then be used to search sequence databases using BLAST, and other sequence searching programs. Block Maker makes a COBBLER sequence automatically, but this page can be used if you want to embed your blocks in a different sequence. If you need to convert another multiple alignment to BLOCKS format, use the Multiple Alignment Processor or the Block Formatter.
Enter your Blocks in BLOCKS format:
Enter your protein sequence in FASTA format:
Page last modified on Dec 1999